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  • Title

    Landscape Visioning Pilot Application for Staten Island

    Lead San Francisco Estuary Institute [SFEI]
    Description A demonstration project to define possible future land use scenarios for Staten island (“visions”) and leverage existing tools/resources to analyze and compare these scenarios.
    Science topics Habitat restoration, Carbon storage
    Updated April 29, 2022
  • Title

    Delta Salmon Rearing Project

    Lead San Francisco Estuary Institute [SFEI]
    Description This project summarizes existing research and knowledge around suitable rearing habitat for Chinook salmon in the Sacramento-San Joaquin Delta;identifies areas of suitability for rearing salmon using a combined suitability analysis of four mapped habitat parameters;and provides recommendations for types of restoration needed to improve or restore rearing habitat, as well as to identify where in the Delta these restoration efforts could be prioritized.
    Science topics Salmon rearing, Salmon migration, Habitat restoration
    Updated April 29, 2022
  • Title

    An Improved Genomics Tool for Characterizing Life History Diversity and Promoting Resilience in Central Valley Chinook Salmon

    Lead Michigan State University
    Description This study will improve our ability to protect the diversity of traits in Chinook salmon. The diversity of Chinook salmon migration timing is decreasing in the Central Valley. A key roadblock to protecting diversity is the current inability to rapidly and inexpensively identify large numbers of individuals from different populations during their migration to the ocean. This study addresses this information gap by leveraging pre-existing genomic data to develop a new technique that will allow scientists to identify individuals to life history type and location. For example, this study will potentially be able to identify Fall Run Chinook that are from the Sacramento versus the San Joaquin River basins. This information, in combination with data on water temperature and river flows, can determine the relationship between environmental conditions and juvenile salmon life history diversity. The information generated by this work will provide managers with the ability to accurately monitor the effect of key management actions on the different Central Valley Chinook salmon populations.
    Science topics Chinook Salmon, Estuaries, Fish, Habitat restoration, Resilience, Salmon rearing
    Updated November 29, 2022
  • Title

    Science for adaptive management of juvenile spring-run Chinook salmon in the San Joaquin River

    Lead University of California - Davis [UC Davis]
    Description Spring-run Chinook salmon rehabilitation efforts are intensifying on the San Joaquin River. Over the last three years, UC Davis has successfully tracked movement, behavior, reach-specific survival, and route selection for reintroduced juvenile spring-run Chinook salmon in this ecosystem. In 2019, information on salmon tracking was combined with state-of-art habitat (fast limnological automated measurements or “FLAMe”) and physiological (e.g. fish condition, survival and transcriptomic) approaches. Results from this work are ongoing but have yielded actionable information on key habitats and management strategies for promoting salmon life-cycles in the San Joaquin River and central Delta. Now UC Davis will further explore promising recent findings. First, the analysis of an additional year of juvenile salmon tracking will occur to glean more survival information across different water year conditions. This information would be married with expanded FLAMe surveys in space and time along with a second year of physiological assays using caged fish. UC Davis will also evaluate the ‘transport effect’ on salmon, in an attempt to explain consistently high losses of JSATS-tagged salmon through the restoration area. Numerous other synergies exist with new and ongoing telemetry work that will be benefitted by a continuation of this work. The goal is to provide actionable science, and open access data, with a high potential to facilitate adaptive management in the San Joaquin River and central Delta.
    Science topics Chinook Salmon, Endangered species, Estuaries, Fish, Habitat restoration
    Updated October 3, 2023
  • Title

    From Microbes to Zooplankton, What Defines a Beneficial Wetland?

    Lead San Francisco State University, Estuary & Ocean Science Center
    Description Our study will characterize species diversity at multiple levels of biological organization in the water column of restoring wetlands in the upper San Francisco Estuary and Delta (SFE), from bacteria to fishes. In doing so, we will also describe the foodweb benefits being provided to larval fishes, including longfin smelt, through additional dietary DNA analysis. We will use the species diversity we find in the water column to identify a subset of biota that are indicative of the conditions present in wetlands in different stages of restoration (early, intermediate, and mature) and identify connections between those indicators to the foodweb resources being provided to higher trophic levels. We will study 3-4 wetlands in each of 3 stages: early (unvegetated), intermediate (partially vegetated and partially channelized), and mature (fully vegetated and channelized) wetlands.
    Science topics Crustaceans, Cyanobacteria, Estuaries, Fish, Food webs, Habitat, Habitat restoration, Insects, Invertebrates, Longfin Smelt, Other species, Other zooplankton, Pelagic fish, Phytoplankton, Predation, Restoration, Salinity, Saltwater / freshwater marshes, Tidal wetlands, Wetlands, Zooplankton
    Updated January 31, 2024