Science activity #49862,
          updated 24 June 2025
        An Improved Genomics Tool for Characterizing Life History Diversity and Promoting Resilience in Central Valley Chinook Salmon
Description / purpose
          This study will improve our ability to protect the diversity of traits in Chinook salmon. The diversity of Chinook salmon migration timing is decreasing in the Central Valley. A key roadblock to protecting diversity is the current inability to rapidly and inexpensively identify large numbers of individuals from different populations during their migration to the ocean.
This study addresses this information gap by leveraging pre-existing genomic data to develop a new technique that will allow scientists to identify individuals to life history type and location. For example, this study will potentially be able to identify Fall Run Chinook that are from the Sacramento versus the San Joaquin River basins. This information, in combination with data on water temperature and river flows, can determine the relationship between environmental conditions and juvenile salmon life history diversity. The information generated by this work will provide managers with the ability to accurately monitor the effect of key management actions on the different Central Valley Chinook salmon populations.
        
        Linked science activities
None specifiedCollaborators
              
                Mariah Meek, Principal investigator -
                            
                Michigan State University
                                        
                      
              
                Tasha  Thompson, Contributor -
                            
                Michigan State University
                                        
                      
              
                Shannon  O'Leary, Contributor -
                            
                Michigan State University
                                        
                      
              
                Melinda  Baerwald, Contributor -
                            
                California Department of Water Resource [DWR]
                                        
                      
              
                Pascale  Goertler, Contributor -
                            
                Delta Stewardship Council
                                        
                        Activity status
- 1 Awarded / Initiating (2019)
 - 2 In progress / Ongoing (2019 - 2022)
 - 3 Complete
 
Funding summary
Total allocated funding: $632,909
| Label | Value | 
|---|---|
| Contract # or labor code | 18209 | 
| Implementing organization | Michigan State University | 
| Funding organization | Delta Stewardship Council | 
| Funding Source | Delta Stewardship Council - General Fund | 
| Date of award | 2019-06-30 | 
| Date of fiscal year-end | Not provided | 
| Total award amount | $632,909 | 
| State type of obligation | Not provided | 
| Federal type of obligation | Not provided | 
| Reimbursability | Not provided | 
| Procurement mechanism | Contracted competitive or direct award | 
| Annual expenditures | 
                                                           2019 - $394831.00 2020 - $238077.00  | 
                        
Location
            
            Subbasins
          
          
            
            Delta regions
          
        Geographic tags
                      None specified
                  
      Products and outputs
| Type | Title | Description | Views | 
|---|---|---|---|
| 
                   | 
                                                                  An Improved Genomics Tool for Characterizing Life History Diversity and Promoting Resilience in Central Valley Chinook Salmon | screenshot of a web-based summary of the project | 0 | 
| 
                                       | 
                                                                  Closing the Loop on Science Funding | In 2018, under the leadership of then Delta Lead S | 1 | 
| 
                                       | 
                                                                  Every cog and wheel: Unraveling biocomplexity at the genomic and phenotypic level in a population complex of Chinook salmon | Genomic diversity is the fundamental building bloc | 169 | 
| 
                                       | 
                                                                  Delta Breeze: May 2022 | The Science Action Agenda in Practice: Competitive | 175 | 
Type and context
Science action area
                                          SAA Action Area 3 (2017-2021): Develop tools and methods to support and evaluate habitat restoration
                ,
                              SAA Action Area 5 (2017-2021): Modernize monitoring, data management, and modeling
                
                                    
          Management themes
Science themes
Types
Science functions
Management actions
                                          Habitat protection / enhancement / restoration
                ,
                              Improving methods and/or infrastructure for science and monitoring