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  • Title

    Delta Wetland Resilience and Blue Carbon

    Lead San Francisco Estuary Institute [SFEI]
    Description This project estimates carbon storage for the past, present and future Delta, as well as GHG fluxes and elevation change based on chosen restoration and rice farming scenarios in the future Delta using the Delta Landscape Scenario Planning Tool. The project also investigates how well the current organic matter parameterizations and inorganic sediment parameterization in the Marsh Equilibrium Model (MEM) represent Delta marsh accretion processes. Knowledge of marsh accretion and migration will be used to develop a spatial conceptual model of marsh resilience in the Delta.
    Science topics Carbon, Greenhouse gas GHG, Resilience, Sea level rise, Subsidence, Wetlands
    Updated June 14, 2024
  • Title

    Delta Landscapes Primary Production Project

    Lead San Francisco Estuary Institute [SFEI]
    Description This project compares first-order estimates of primary production among five major groups of primary producers, historically and today, to better identify the potential food production of different habitat types, and inform restoration actions that could increase food availability for wildlife.
    Science topics Primary production, Phytoplankton, Emergent macrophytes, Epiphytic algae, SAV/FAV
    Updated April 29, 2022
  • Title

    Habitat, hatcheries, and nonnative predators interact to affect juvenile salmon behavior and survival

    Lead University of California - Santa Cruz [UCSC]
    Description Chinook salmon are an iconic part of California’s environment and heritage, and important both economically and culturally. In the Sacramento River, the winter-run Chinook population is endangered, and there is strong interest in restoring these populations. To do so, resource managers need to better understand the pressures on wild populations. Predation by nonnative predators affects survival of young salmon but may also affect the behavior of salmon. Changes to salmon behavior also have costs but are not currently considered in management. Managers need information on how predators affect juvenile salmon behavior, how they might vary under different conditions, and how they scale up to affect populations.
    Science topics Chinook Salmon, Fishing
    Updated November 17, 2022
  • Title

    Yolo Bypass Salmonid Habitat Restoration and Fish Passage: Scenario Analysis of Fremont Weir Notch – Integration of Engineering Designs, Telemetry, and Flow Fields

    Lead U.S. Army Corps of Engineers [USACE]
    Description This study analyzes 12 notch scenarios in the Fremont Weir in terms of entrainment of juvenile salmon. The goal is to quantify the relative entrainment rates (between 0 and 1) across the suite of scenarios and to identify possible strategies for enhancing entrainment outcomes. This study does not predict future entrainment as models generally do not predict future outcomes so much as highlight trends
    Science topics Chinook Salmon, Endangered species, Water conveyance / infrastructure
    Updated April 29, 2022
  • Title

    Reevaluating ecosystem functioning and carbon storage potential of a coastal wetland through integration of lateral and vertical carbon flux estimates

    Lead University of Washington [UW]
    Description This study aims to produce an integrated, net ecosystem carbon budget for Suisun Marsh, a representative ecosystem in the delta. This project combines diverse measurements on land and in the adjacent marine environment to produce the first directly measured, complete carbon budget for a coastal wetland habitat. This work has generated a more complete picture of the potential of wetland preservation for greenhouse gas reduction, as well as the processes that shape wetland accretion and resilience to sea-level rise. The project will provide vital information for understanding the ecosystem services, food webs, and carbon storage potential of the region’s wetlands, as well as provide new methodology that could be used by researchers around the world.
    Science topics Atmosphere, Carbon, Carbon storage, Evaporation / evapotranspiration, Non-forested vegetation, Sea level rise, Sediments, Surface water / flow, Wetlands
    Updated November 17, 2022
  • Title

    Simulating methylmercury production and transport at the sediment-water interface to improve the water quality in the Delta

    Lead University of California - Merced [UC Merced]
    Description The aim of this project was to improve basic knowledge of mercury cycling and aid management of net methylmercury production in the delta by developing a kinetic-thermodynamic reaction model that describes and quantifies mercury cycling in delta sediments. The model was used to assess uncertainties and estimate methylation and demethylation rates — the processes by which methylmercury is produced and breaks down. In addition, the project examined coupling of mercury cycling with cycling of iron, sulfur, and manganese.
    Science topics Bioaccumulation, Chemistry, Hg and methyl mercury
    Updated November 17, 2022
  • Title

    Quantifying Biogeochemical Processes through Transport Modeling: Pilot Application in the Cache Slough Complex

    Lead University of California - Davis [UC Davis]
    Description Funding for this project will focus on observations and hydrodynamic models of the Cache Slough Complex. To accomplish this, the project implementation will involve making extensive use of models developed in ongoing CDFW-funded projects. These projects have included the development and initial calibration of a two-dimensional hydrodynamic model of the Cache Slough Complex. The model utilizes the Deltares Flexible Mesh numerical model, an open-source hydrodynamic model applied in a growing number of studies in the Bay/Delta system. Work is continuing in that project to refine the model calibration within the Cache Slough Complex and extend the calibrated period. The model is also being applied to study how tidal forcing and channel configuration shape the hydrodynamic connections between parts of the system.
    Science topics None specified
    Updated November 18, 2022
  • Title

    Climate change impacts to San Francisco Bay-Delta wetlands: Links to pelagic food webs and predictive responses based on landscape modeling

    Lead San Francisco State University [SFSU]
    Description The purpose of this project is to 1) evaluate the potential impacts of climate change on SF Bay-Delta tidal wetlands, 2) improve our understanding of the linkage between these wetlands and the pelagic food web, especially fish populations, and 3) use this information to make predictions about potential effects of climate change on Bay-Delta fish populations.
    Science topics Pelagic fish, Wetlands
    Updated April 29, 2022
  • Title

    The Transport and Dispersion of Rafting Vegetation in the Sacramento-San Joaquin Delta

    Lead University of California - Berkeley [UC Berkeley]
    Description The research we are proposing here is focused on developing a thorough, mechanistic understanding of how rafting vegetation, such as hyacinths or egeria, is transported in the Sacramento-San Joaquin Delta. Our approach is to examine in detail the forces that act on rafts of vegetation, and the resulting raft accelerations, to establish a predictive model of raft pathlines. Our model development will be built around a series of field experiments that include measurements of raft movement using GPS-logging drifters integrated into rafts, tidal and wind-forcing using a boat mounted current profiler and an anemometer, and direct estimation of the water-induced shear stress using a point velocity meter incorporated into the actual rafts. These field observations will be used to critically evaluate a numerical model of both channel (tidal) flows and resulting raft movement. Our initial development will include a highly-resolved channel flow model, which will explicitly capture more lateral variability, including low velocity side “pockets”, than is typically resolved with Delta scale hydrodynamic models. Initially, this will allow us to carefully evaluate the quality of our raft tracking calculations. Once the approach is established to be accurate, however, these high-resolution flows will be used to numerically calculate the effective advection and dispersion of rafts in the Delta channel under consideration. This analysis will be focused on parameterizing the effects on raft transport of structures and processes that are unresolved in typical Delta hydrodynamics models. An example of a process that is likely to be important to parameterize is the trapping and retention of rafts along the perimeter of channels due to off-axis wind forcing, and the resulting along-channel dispersion of rafts. In order to examine the effective advection and dispersion of rafts in Delta channels, we propose to pursue this combination of field and numerical studies of raft transport in locations of increasing complexity: first in idealized, straight channels, then in a natural, sinuous channel and a channel junction, and finally throughout the entire Delta. Our research is strongly motivated by the desire to provide a predictive model of dispersion in the Delta for floating objects that respond to both wind and tidal forcing. Immediate applications involve the movement of hyacinth rafts and egeria to evaluate potential management strategies. Important future applications are likely to include consideration of other biological invasions, due to the potential for rafts to provide a transport pathway, and analysis of the movement of accidental or intentional releases of floating material in the Delta.
    Science topics None specified
    Updated November 29, 2022
  • Title

    A Calibration-Free Approach to Modeling Delta Flows and Transport

    Lead University of California - Berkeley [UC Berkeley]
    Description The purpose of this project is to develop and evaluate an integrated system for the prediction of Delta flows and transport in real-time that doesn't rely upon historical data sets for calibration and validation. The system consists of observational and computational components, along with real-time communication and coordination.
    Science topics None specified
    Updated April 29, 2022
  • Title

    A Statistical Model of Central Valley Chinook Incorporating Uncertainty

    Lead R2 Resource Consultants Inc.
    Description The purpose of this project is to develop a statistical modeling approach to the two Central Valley Chinook Salmon species that incorporates mortality in all phases of salmon life history, and includes the effects of uncertainty in assessing population status, guiding future research, and making management decisions.
    Science topics Chinook Salmon
    Updated April 29, 2022
  • Title

    Quantifying Factors Affecting Migration Routing and Survival of Juvenile Late-Fall Chinook Salmon in the Sacramento-San Joaquin River Delta

    Lead U.S. Geological Survey [USGS]
    Description Juvenile Chinook salmon emigrating from natal tributaries of the Sacramento River must negotiate the Sacramento-San Joaquin River Delta where they disperse among the Delta's complex channel network. Natural processes and water management actions affect the fraction of the population using different migration routes through the Delta and survival within those routes, but quantifying these relationships has proven difficult. Since 2006, acoustic telemetry techniques have been used to quantify both movement among migration routes and survival within routes, providing the first insights into how route-specific survival contributes to population-level survival in the Delta. In this project, we propose to use existing acoustic telemetry data from multiple sources to 1) Quantify factors affecting migration routing of juvenile salmon emigrating from the Sacramento River, 2) Quantify factors affecting survival of juvenile salmon within specific migration routes, and 3) Simulate population-level survival through the Delta under a limited number of historical and operational scenarios. Collating telemetry data from multiple sources over numerous years offers a unique opportunity to identify important relationships that might otherwise be difficult to detect for any particular study in a given year. Quantifying such relationships is critical to informing resource management that seeks to balance use of water resources with recovery of endangered salmon populations.
    Science topics Chinook Salmon
    Updated April 29, 2022
  • Title

    An Open-Source, Three-Dimensional Unstructured-Grid Model of the Sacramento/San Joaquin Delta: Model Construction and Application to Delta Hydrodynamics and Temperature Variability

    Lead Stanford University
    Description Motivated by the need to predict transport in the Delta, this project will apply the open-source, unstructured-grid computer model, SUNTANS (Stanford Unstructured Nonhydrostatic Terrain following Adaptive Navier Stokes simulator) to the Sacramento/San Joaquin Delta. SUNTANS solves the governing equations of fluid flow on a grid that permits fine detail in areas of particular interest in the Delta, while allowing us to include the entirety of the Bay/Delta system so as to properly model oceanic and estuarine influences on the Delta We have two aims:(1) to carry out the model development needed to apply SUNTANS to the Delta;(2) to apply the model to look at aspects of the physical variability of the Delta that are critical to ecosystem function and to understanding how physical processes in the Delta affect ecosystem function, most notably entrainment of fish and other organisms by the export facilities. In particular, we propose to look at flow behavior at channel junctions, a key aspect of Delta hydrodynamics that influences dispersion in the Delta and thus the transport of biota, nutrients and contaminants. We also will examine the dynamics of spatial and temperature variability in the Delta in response to tides, atmospheric forcing, river flows, and diversions, variability that must be properly calculated to forecast how climate change and altered project operations may affect key species like Delta Smelt. We will carry out new fieldwork to support our modeling.
    Science topics Water temperature
    Updated April 29, 2022
  • Title

    Integrating Ecosystems, Flood Control, Agriculture, and Water Supply Benefits: An Application to the Yolo Bypass

    Lead University of California - Davis [UC Davis]
    Description The Yolo Bypass presents an opportunity to develop mechanisms governing the management of flows across floodplains that balance ecosystem services with economic and recreational functions, and to study the untapped potential of such floodplains to play a role in conjunctive surface and groundwater management. Analysis to the necessary high degree of spatial resolution for such management decisions is generally lacking for the Yolo Bypass. This proposal seeks funding for an interdisciplinary study to better understand the economic, hydrologic, and ecological functioning of land and water across the bypass, and to develop tools that use this knowledge in identifying promising strategies for the timing and configuration of spring inundation. Agronomic, economic, and hydraulic models will be used with formal interviews to study the relationship between flooding and six Yolo Bypass functions: (1) Agricultural Economics, (2) Waterfowl management, (3) Native Fish habitat, (4) Flood Control, (5) Groundwater storage, and (6) Recreation. Data from these first efforts will be incorporated into an optimization model that identifies promising inundation alternatives for ecosystem services which minimize costs to landowners and waterfowl managers, and maximize potential conjunctive use benefits. This synthesis answers the Delta Science Program's request for coupled hydrologic and ecosystem models, and for water and ecosystem management decision support system development.
    Science topics None specified
    Updated April 29, 2022
  • Title

    CASCaDE II: Computational Asessments of Scenarios of Change for the Delta Ecosystem

    Lead U.S. Geological Survey [USGS]
    Description This proposal builds upon an existing model-based effort to develop a holistic view of the Bay-Delta-River-Watershed system. CASCaDE I developed a set of linked models to assess Delta ecosystem response to climate change. In CASCaDE II, we propose to refine and extend those modeling capabilities to assess Delta ecosystem response to changes in climate and physical configuration. With a new state-of-the-art hydrodynamic and sediment model at its core, CASCaDE II will link models of climate, hydrology, hydrodynamics, sediment, geomorphology, phytoplankton, bivalves, contaminants, marsh accretion, and fish. Our goals are to apply these linked models to 1) better understand Delta ecosystem function, 2) assess possible futures of the Delta under scenarios of climate and structural change, and 3) provide science-based information to support the DSC in its co-equal goals of water supply and ecosystem protection. The tools developed will provide an objective basis for anticipating and diagnosing Delta ecosystem responses to planned and unplanned changes. Experiments using the linked models are designed to address questions such as: How will climate change, together with new conveyance structures or increased flooded island habitat, alter water flow and drinking water quality? With projected changes in residence time, turbidity, temperature, and salinity, how will primary productivity, invasive bivalves, marsh processes, contaminant dynamics, and fish populations respond?
    Science topics None specified
    Updated April 29, 2022
  • Title

    Next Generation Multi-Hazard Levee Risk Assessment

    Lead University of California - Los Angeles [UCLA]
    Description In June 2004, a 350-foot levee section gave way west of Stockton, flooding crops and more than a dozen homes, and challenging state officials to protect the state's water supply. What is the risk of that happening again somewhere in the Delta? In light of agricultural fields sinking, the sea level rising, more frequent and severe floods occurring, and earthquakes looming, improvements are estimated to cost $3.8 - $4.3 billion over the next few decades. This study combines 3-D representations with information on the levee’s structure to analyze how different levees respond to floods, sea level rise, and earthquakes. State officials released the last Delta Risk Management Strategy a decade ago. Since then, scientists have collected significant amounts of data and have developed new procedures to compute the risk of failure. This work will produce new Delta-wide data sets important for characterizing the hazards coming from floods and earthquakes. It will also develop the best method to conduct levee hazard assessments. Applying this new method will ensure wise investments and effective threat mitigation Delta-wide.
    Science topics None specified
    Updated April 29, 2022
  • Title

    Tidal Wetland Restoration in the Bay-Delta Region: Developing Tools to Measure Carbon Sequestration, Subsidence Reversal, and Climate Resiliance 2021

    Lead California State University [CSU]
    Description Tidal marshes are important ecosystems in the San Francisco-Bay Delta. They remove carbon from the atmosphere, build up soils that buffer our communities from sea level rise, mitigate excessive nutrients (like nitrogen), and provide critical habitat and food resources for a diversity of species. It is difficult to predict how tidal marshes change naturally over time versus as a response to climate change, restoration and water quality changes. This project provides the first ever multi-year dataset of the complete carbon budget of a tidal marsh. This dataset will be used to predict seasonal and annual carbon budgets in tidal marshes over a range of salinities. The model will assess the sustainability of existing and potential restored tidal wetland benefits over the next 100 years using remote sensing data. The model will be an open-source tool designed for use by wetland managers and decision makers in the Bay-Delta region. This project supports ongoing initiatives to restore tidal wetlands in the Delta and our ability to manage them in a changing world.
    Science topics None specified
    Updated April 29, 2022
  • Title

    Life History Variation in Steelhead Trout and the Implications for Water Management

    Lead University of California - Santa Cruz [UCSC]
    Description The purpose of this project is to explore the ways in which different stream hydrology and temperature can affect the growth and maturation of steelhead trout. Model examination will incude various stream flow management regimes may affect trout population dynamics region-wide.
    Science topics Steelhead Trout
    Updated April 29, 2022
  • Title

    Evaluating Juvenile Salmonid Behavioral Responses to Hydrodynamic Conditions in the Sacramento-San Joaquin Delta

    Lead State Water Contractors [SWC]
    Description This study combines detailed model predictions with salmonid tracking data to inform how river flows affect steelhead movement through the Delta. This project leverages an existing 6-year data set to support analysis of salmonid behavioral responses across a broad range of water years. The study will evaluate behavior relative to flow under existing regulatory requirements (Old and Middle River Flow and the Inflow to Export ratio), evaluate five new potential water management metrics identified by the Collaborative Adaptive Management Team Salmonid Scoping Team, and improve the understanding of what conditions affect survival.
    Science topics None specified
    Updated April 29, 2022
  • Title

    CASCaDE: Computational Asessments of Scenarios of Change for the Delta Ecosystem

    Lead U.S. Geological Survey [USGS]
    Description Agencies of the CALFED Bay-Delta Authority (CBDA) face tough decisions as they search for strategies to meet their programmatic goals of stabilizing water supplies in California, providing safe drinking water to a growing population, and sustaining diverse populations of native species and their supporting ecosystem functions. The challenge of finding balanced solutions to these goals is daunting because of the enormous complexity of the San Francisco Bay-Delta system and its tributary rivers and their watersheds. The challenge grows as we consider the additional layer of complexity imposed by the certainty that all the key forces that drive dynamics of this ecosystem (climate, hydrology, water management, land use, sea level) will change significantly in future decades. This proposal describes a model-based approach for developing a long view of the Bay-Delta-River-Watershed system. The long view will be developed through simulations with linked models to project changes under a range of plausible scenarios of global warming, hydrologic responses, land-use change, reconfigurations of within-Delta habitats, and sea level rise. Our goals are to develop and apply a model-based approach of ecological forecasting to project future states of the Delta ecosystem under prescribed scenarios of change, and to communicate the outcomes of those scenarios to resource managers facing the daunting challenge of meeting CBDP goals in a continually changing world.
    Science topics None specified
    Updated November 18, 2022
  • Title

    Pesticide risk analyses and management actions, chemical fate and transport

    Lead University of California - Santa Barbara [UCSB]
    Description This project work will model the risk of pesticide pollution in 225 sub-catchments of the Sacramento-San Joaquin Bay-Delta. The model will account for water management practices, land use, pesticide use rates, and cumulative pesticide stress. Additionally, this work will produce a web-based tool to simulate current and future risks based on the ranking of primary sources of pesticide contribution. This work will provide a framework to predict risk from chemical stressors. Specific objectives are: (1) enhanced pro-active chemical risk assessment, (2) creation of a tool which enables science-based chemical use decisions, (3) improved risk screening for vulnerable areas, and (4) identification of adverse effects of current and future chemical use strategies.
    Science topics Herbicides
    Updated April 29, 2022
  • Title

    Nitrogen cycling and ecosystem metabolism before and after regulatory action

    Lead Stanford University
    Description This project focuses on nitrogen and carbon cycling within the Bay-Delta, both before and after planned 2021 upgrades to the Sacramento Regional Wastewater Treatment Plant (SRWTP). We will measure in situ benthic nitrate (NO3- ) and oxygen (O2) fluxes using a new non-invasive technique, which provides high frequency continuous data over a much larger sediment surface area than traditional methods. The SRTWP currently represents one of the largest point sources of nitrogen to the Bay-Delta, with the upgrades projected to cut nitrogen outputs from the plant by ~65%. This project will help assess the efficacy of this major management action and our results will add to biogeochemical models for the Bay-Delta.
    Science topics Nitrogen / ammonia
    Updated April 29, 2022
  • Title

    Survivial and Migratory Pattern of Central Valley Juvenile Salmonids

    Lead University of California - Davis [UC Davis]
    Description The purpose of this project is to determine the survival and movement patterns of late-fall Chinook salmon smolts and steelhead smolts as they migrate downstream. This information is important to better understand how salmon move through the system.
    Science topics None specified
    Updated April 29, 2022
  • Title

    A Multi-Stock Population Dynamics Framework for the Recovery of Sacramento River Chinook Salmon

    Lead University of Washington [UW]
    Description The purpose of this project is to construct a multi-stock salmon population model and management strategy evaluation (MSE) tool that addresses the cross-linkages between water use and fishery ecosystem response. Recent federal court judgment concluded that insufficient evidence was provided for prescribing specific flow restrictions in two recent conservation measures. The inability to provide adequate evidence was a byproduct of not having the correct quantitative tools at hand. We propose to build these tools by furthering technological developments of previous analyses of Central Valley Chinook population dynamics. Specifically, our work will integrate multiple salmon populations together into a single model that can reconstruct historical population dynamics such that environmental conditions and water resource use can be used as predictors of biological responses of multiple populations. Our goal is to integrate populations into a single model so that the effect of water management and fishery management policies can be examined in light of all fish populations simultaneously. This pertains to the biological interactions between the populations as well as the way in which fisheries impact individual populations depending on growth and maturation rate of each population. All analysis will be framed in the context of historical and proposed water use patterns.
    Science topics Flows
    Updated April 29, 2022
  • Title

    Modeling the Delta Smelt Population of the San Francisco Estuary

    Lead San Francisco State University [SFSU]
    Description The purpose of this project is to develop an individual-based particle-tracking model examining population behavior of Delta smelt under different scenarios.
    Science topics Delta Smelt
    Updated April 29, 2022
  • Title

    Assessing sea-level rise and flooding changes in the Sacramento/San Joaquin Delta using historical water-level records

    Lead California State University [CSU]
    Description The project aims to recover, digitize, and analyze more than 1300 station years of ‘lost-and-forgotten’ water level records collected from 1857 to 1982 in the Sacramento-San Joaquin Delta. These measurements, augmented by modern data, will improve our understanding of tidal, flood, and sea level trends in the system. By determining ‘hotspots’ of habitat and flood risk sensitivity, the results may be used to better focus future scientific and management priorities, to protect the environment, manage flood risk, and enhance community resilience to climate change
    Science topics Backwater, Climate change, Environmental drivers, Estuaries, Land elevation, Levees, Outflow, Sea level rise, Stage, Subsidence, Surface water / flow, Tides, Velocity, Vessels and shipping channels, Water, Wind
    Updated October 10, 2023
  • Title

    Impacts of predation and habitat on Central Valley Chinook smolt survival

    Lead University of Vermont, USGS Vermont Cooperative Fish and Wildlife Research Unit
    Description The Sacramento River in California’s Central Valley has been highly modified over the past 150 years due to mining, urbanization, and impoundment/diversion of river flow to provide water for municipal, industrial, and agricultural needs. Land use changes combined with high levels of harvest have been accompanied by drastic declines in native salmon populations, including the once abundant Chinook salmon (Oncorhynchus tshawytscha). Further, the region has been subject to the introduction and widespread establishment of non-native fish species, some of which are predators of juvenile salmon. Of the four historic ecotypes of Chinook salmon (fall, late-fall, winter, and spring runs), winter- and spring-runs have been most impacted and are currently listed as endangered and threatened respectively under the US Endangered Species act. Past research has illustrated how smoltification of juvenile salmon and outmigration from freshwater to the ocean is a time of increased mortality, and reduced survival at this life stage can impact the number of reproducing adults returning to the system in subsequent years. While these studies have provided valuable information on how habitat and environmental conditions experienced by migrating Chinook salmon smolts can affect survival, they have primarily focused on individual ecotypes during the portion of the year where downstream migrations occur. However, variation in smolt size and migration timing among ecotypes can expose migrating fish to differing environmental conditions and levels of exposure to predation, which can present distinct risks for outmigration survival. To identify the areas and environmental conditions which have the greatest relative impact on juvenile survival for each ecotype, this project will use over ten years of data (2012-2022) from acoustically tagged smolts representing all four Chinook salmon ecotypes in the Sacramento River/Central Valley. Combining these data will increase sample size relative to previous studies, the range of environmental conditions (e.g., temperature, flow, and predator abundance) modeled, the range of fish sizes, and thus, the statistical power of our analyses. We hypothesize that each ecotype will have different factors that will be the primary drivers of mortality experienced during outmigration. To test our hypotheses, we will implement Cormack-Jolly-Seber (CJS) mark-recapture models to estimate both the probability of survival through reaches of the Sacramento River delineated by acoustic receivers, and the detection probability in each reach. Survival will be modeled as a function of individual, release group, reach-specific, and time-varying covariates. Further, to examine the relative impact of predation on smolt survival, we will include an additional covariate representing predator-prey encounter rates using the Mean Free-path Length model. Finally, model selection will be applied to a series of CJS models to assess the relative impact of each covariate on smolt survival for each of the four Chinook ecotypes.
    Science topics Chinook Salmon, Environmental drivers, Fish, Flows, Habitat, Predation, Salmon migration, Water temperature
    Updated February 2, 2024
  • Title

    The Relative Contributions of Contaminants to Ecological Risk in the Upper San Francisco Estuary

    Lead Delta Stewardship Council - Delta Science Program
    Description This project developed methods to calculate risk of mixtures of pesticides for the Upper San Francisco Estuary (USFE). We used curve fitting to estimate the exposure-response curves for each individual chemical and then the mixture. For the mixtures, the models were normalized for specific ECx values. In that way, the curve fitting was optimized for effects that are comparable to most threshold values. A Bayesian network was built that incorporated five different pesticides and mercury. The input distributions of the contaminants were measured amounts from each of the six risk regions. We also explored three different methods of combining the results of the three pathways – additive, average, and expert judgement. The initial result was the BN model’s Predicted Fish Mortality (%). The Sensitivity analysis (mutual information) identified the most important components of the Bayesian network in determining the toxicity. The top two pathways were the Malathion/Diazinon Mortality pathway and the Mercury Mortality pathway. For the individual nodes Mercury, Bifenthrin and Season were key. Currently, we are completing the risk assessment network by adding Chinook salmon and Delta smelt population pathways to estimate risk to the six Risk Regions. A major accomplishment was the demonstration that curve fitting using additive models for mixtures can be used to estimate fish toxicity in this proof-of-concept model. Bifenthrin, the specific risk region, and season were the inputs that were most important to the calculation. Factors determining macroinvertebrate community structure were identified using multivariate tools. Water quality parameters were the most important in determining clusters of similar macrobenthic communities. Because contaminants were not statistically significant in determining these patterns, further analysis of macroinvertebrate community structure was postponed. At this time, the techniques applied in this program appear applicable to estimating risk due to the variety of chemicals and other stressors to the multiple endpoints under management in the USFE.
    Science topics None specified
    Updated January 24, 2024
  • Title

    Analysis of Delta Salinity during Extended Drought – Pilot Project

    Lead California Department of Water Resource [DWR]
    Description Managing California water operations for multiple priorities under long term drought conditions is becoming an increasing challenge which is compounded by potential sea level rise. This project is a pilot exercise to demonstrate the utility of hydrodynamic and salinity transport models in to understand options for salinity management under extended drought combined with climate change and sea level rise. The project will also consider how to make model outputs available and relevant to other modeling and environmental management decision making efforts. The full range of potential sea level rise, restoration and operational actions is extensive, involving many potential combinations of individual actions. Therefore, it is difficult to fully explore potential actions with high resolution multi-dimensional models. The proposed approach is to use high resolution multi-dimensional flow and transport models to evaluate changes in transport in the Delta under sea level rise, restoration, and operational scenarios. The predicted changes to salinity for a given scenario will inform operations modeling in CALSIM through re-calibration of an ANN to approximately account for the changed salinity response of the estuary. Operations modeling incorporating the revised ANN will then estimate Delta inflows and overall water cost to meet Delta standards for the scenario. “Round-trip” modeling will be performed using the detailed Delta models to verify that the predicted hydrologic inputs allow appropriate compliance with water quality standards and will provide other metrics related to Delta transport.
    Science topics Conductivity, Drought, Landscape change, Restoration planning, Sea level rise, Water operations / exports
    Updated June 14, 2024
  • Title

    Coastal Wetland Restoration a Nature Based Decarbonization Multi-Benefit Climate Mitigation Solution: Policy and Governance

    Lead University of California - Davis [UC Davis]
    Description A team at UC Davis (Dr. Mark Lubell, Dr. Gwen Arnold, PhD Candidate Kyra Gmoser-Daskalakis) is conducting social science research on wetland restoration in the California Bay-Delta as part of a larger, interdisciplinary project on wetland restoration across multiple University of California campuses and national labs ("Coastal Wetland Restoration a Nature Based Decarbonization Multi-Benefit Climate Mitigation Solution"). First, the project is conducting social network and spatial analysis using the EcoAtlas project database to examine drivers of wetland restoration investment in the Bay-Delta from the 1980s to now. Second, case studies of individual restoration projects and interviews with 40+ restoration project partners examines barriers to the restoration implementation and perceptions and goals of multi-benefits among interested parties. Preliminary results have been shared at the State of the Estuary and Bay-Delta Science Conferences in 2024. See https://wetlands.ucsc.edu/index.html for more information.
    Science topics Restoration, Restoration planning
    Updated September 25, 2024
  • Title

    The value of information is context dependent: a demonstration of decision tools to address multi-species river temperature management under uncertainty

    Lead CALFED Bay-Delta Program
    Description

    Tradeoffs among objectives in natural resource management can be exacerbated in altered ecosystems and when there is uncertainty in predicted management outcomes. Multicriteria decision analysis (MCDA) and value of information (VOI) are underutilized decision tools that can assist fisheries managers in handling tradeoffs and evaluating the importance of uncertainty. We demonstrate the use of these tools using a case study in the Sacramento River, California, U.S.A., where two imperiled species with different temperature requirements, winter-run Chinook Salmon (Oncorhynchus tshawytscha) and Green Sturgeon (Acipenser medirostris), spawn and rear in the artificially cold Shasta Dam tailwater. A temperature-control device installed on Shasta Dam maintains cool water for Chinook Salmon; however, uncertainties exist related to the effects of temperatures on the spawning and rearing of both species. We consider four alternative hypotheses in models of early life-stage dynamics to evaluate the effects of alternative temperature-management strategies on Chinook Salmon and Green Sturgeon management objectives. We used VOI to quantify the increase in management performance that can be expected by resolving hypothesis-based uncertainties as a function of the weight assigned to species-specific objectives. We found the decision was hindered by uncertainty; the best performing alternative depends on which hypothesis is true, with warmer or cooler alternative management strategies recommended when weights favor Green Sturgeon or Chinook Salmon objectives, respectively. The value of reducing uncertainty was highest when Green Sturgeon was slightly favored, highlighting the interaction between scientific uncertainty and decision makers’ values. Our demonstration features MCDA and VOI as transparent, deliberative tools that can assist fisheries managers in confronting value conflicts, prioritizing resolution of uncertainty, and optimally managing aquatic ecosystems.

    Science topics Chinook Salmon, Fish, Flows, Green sturgeon, Salmon rearing, Sturgeon, Temperature, Water conveyance / infrastructure, Water temperature
    Updated October 10, 2024