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  • Title

    Delta Aquatic Resource Inventory

    Lead Sacramento-San Joaquin Delta Conservancy
    Description The Delta Aquatic Resources Inventory of surface waters, wetlands and other aquatic resources in the Sacramento-San Joaquin Delta (Delta) will provide a standard regional approach to wetland classification and mapping to support wetland restoration planning, tracking, and reporting. It will faciliate implementation of the California Wetland and Riparian Areas Monitoring Plan (WRAMP) in the Delta.
    Science topics Wetland mapping
    Updated November 17, 2022
  • Title

    Delta Regional Monitoring Program Mercury Monitoring

    Lead Delta Regional Monitoring Program [RMP]
    Description Monitoring of sport fish and water was conducted by the Delta Regional Monitoring Program (Delta RMP) from August 2016 to April 2017 to begin to address the highest priority information needs related to implementation of the Sacramento–San Joaquin Delta Estuary Total Maximum Daily Load (TMDL) for Methylmercury (Wood et al. 2010). Two species of sport fish, largemouth bass (Micropterus salmoides) and spotted bass (Micropterus punctulatus), were collected at six sampling locations in August and September 2016. The length-adjusted (350 mm) mean methylmercury (measured as total mercury, which is a routinely used proxy for methylmercury in predator fish) concentration in bass ranged from 0.15 mg/kg or parts per million (ppm) wet weight at Little Potato Slough to 0.61 ppm at the Sacramento River at Freeport. Water samples were collected on four occasions from August 2016 through April 2017. Concentrations of methylmercury in unfiltered water ranged from 0.021 to 0.22 ng/L or parts per trillion. Concentrations of total mercury in unfiltered water ranged from 0.91 to 13 ng/L. Over 99% of the lab results for this project met the requirements of the Delta RMP Quality Assurance Program Plan, and all data were reportable. This data report presents the methods and results for the first year of monitoring. Historic data from the same or nearby monitoring stations from 1998 to 2011 are also presented to provide context. Monitoring results for both sport fish and water were generally comparable to historic observations. For the next several years, annual monitoring of sport fish will be conducted to firmly establish baseline concentrations and interannual variation in support of monitoring of long-term trends as an essential performance measure for the TMDL. Monitoring of water will solidify the linkage analysis (the quantitative relationship between methylmercury in water and methylmercury in sport fish) in the TMDL. Water monitoring will also provide data that will be useful in verifying patterns and trends predicted by numerical models of mercury transport and cycling being developed for the Delta and Yolo Bypass by the California Department of Water Resources (DWR).
    Science topics Biosentinels, Fish, Methylmercury, Restoration, Water
    Updated November 17, 2022
  • Title

    Yolo Bypass Salmonid Habitat Restoration and Fish Passage: Scenario Analysis of Fremont Weir Notch – Integration of Engineering Designs, Telemetry, and Flow Fields

    Lead U.S. Army Corps of Engineers [USACE]
    Description This study analyzes 12 notch scenarios in the Fremont Weir in terms of entrainment of juvenile salmon. The goal is to quantify the relative entrainment rates (between 0 and 1) across the suite of scenarios and to identify possible strategies for enhancing entrainment outcomes. This study does not predict future entrainment as models generally do not predict future outcomes so much as highlight trends
    Science topics Chinook Salmon, Endangered species, Water conveyance / infrastructure
    Updated April 29, 2022
  • Title

    Predicting the Effects of Invasive Hydrozoa [Jellyfish] on Pelagic Organisms Under Changing Salinity and Temperature Regimes

    Lead University of California - Davis [UC Davis]
    Description The purpose of this project seeks to investigate the potential effects of jellyfish, a devising invader of some ecosystems, on the SFE ecosystem, to determine the key factors allowing successful establishment and spread of these species, and to predict future effects and spread of the invasions.
    Science topics Water temperature, Salinity, Pelagic fish, Jellyfish
    Updated April 29, 2022
  • Title

    The Transport and Dispersion of Rafting Vegetation in the Sacramento-San Joaquin Delta

    Lead University of California - Berkeley [UC Berkeley]
    Description The research we are proposing here is focused on developing a thorough, mechanistic understanding of how rafting vegetation, such as hyacinths or egeria, is transported in the Sacramento-San Joaquin Delta. Our approach is to examine in detail the forces that act on rafts of vegetation, and the resulting raft accelerations, to establish a predictive model of raft pathlines. Our model development will be built around a series of field experiments that include measurements of raft movement using GPS-logging drifters integrated into rafts, tidal and wind-forcing using a boat mounted current profiler and an anemometer, and direct estimation of the water-induced shear stress using a point velocity meter incorporated into the actual rafts. These field observations will be used to critically evaluate a numerical model of both channel (tidal) flows and resulting raft movement. Our initial development will include a highly-resolved channel flow model, which will explicitly capture more lateral variability, including low velocity side “pockets”, than is typically resolved with Delta scale hydrodynamic models. Initially, this will allow us to carefully evaluate the quality of our raft tracking calculations. Once the approach is established to be accurate, however, these high-resolution flows will be used to numerically calculate the effective advection and dispersion of rafts in the Delta channel under consideration. This analysis will be focused on parameterizing the effects on raft transport of structures and processes that are unresolved in typical Delta hydrodynamics models. An example of a process that is likely to be important to parameterize is the trapping and retention of rafts along the perimeter of channels due to off-axis wind forcing, and the resulting along-channel dispersion of rafts. In order to examine the effective advection and dispersion of rafts in Delta channels, we propose to pursue this combination of field and numerical studies of raft transport in locations of increasing complexity: first in idealized, straight channels, then in a natural, sinuous channel and a channel junction, and finally throughout the entire Delta. Our research is strongly motivated by the desire to provide a predictive model of dispersion in the Delta for floating objects that respond to both wind and tidal forcing. Immediate applications involve the movement of hyacinth rafts and egeria to evaluate potential management strategies. Important future applications are likely to include consideration of other biological invasions, due to the potential for rafts to provide a transport pathway, and analysis of the movement of accidental or intentional releases of floating material in the Delta.
    Science topics None specified
    Updated November 29, 2022
  • Title

    SAIL [Coordinated Enhanced Acoustic Telemetry Program]

    Lead U.S. Bureau of Reclamation [USBR]
    Description These monitoring efforts can provide critical information on juvenile salmonid distribution and survival, which inform biologists and managers interpretations of the exposure and intensity of CVP and SWP water operation risks on tagged populations in Central Valley rivers and the Bay- Delta. Understanding salmon survival and migration dynamics in the Delta and its tributaries is critical to the recovery of ESA-listed species, and sport and commercial fisheries management. For example, estimating the population size of endangered Sacramento River Winter-run Chinook (SRWRC) as they enter and exit the Delta is considered critical for informing Delta water management actions (Interagency Ecological Program (IEP) SAG 2013). “The use of realtime acoustic receivers that immediately transmit acoustic tagged (AT) fish detections needs to be included in the expanded network” (Johnson et al., in press). Tracking the fate of individual tagged fish will be accomplished with AT and used to develop estimates of survival and movement for other non-AT fish also part of that group. Population level sampling programs will use survival estimates generated by AT and applied to other mass marked (coded wire tagging) groups to develop improved capture efficiency for these sampling programs. Objectives: • Deploy and service field monitoring acoustic telemetry stations at locations important to fish and water management. • Implant, transport, and release acoustically tagged juvenile ESA-listed wild and hatchery juvenile salmonids. • Analysis and synthesis to support production and development of new metrics for understanding the survival, distribution, and entrainment of juvenile salmonid along the Sacramento River and its floodways, as well as, the Bay-Delta. Six-Year Steelhead Study Continuation Reclamation’s Proposed Action for ROC on LTO Section 4.10.5.12.3 Additional Measures includes a San Joaquin Basin Steelhead Telemetry Study -- Continuation of the 6-Year Steelhead telemetry study for the migration and survival of San Joaquin Origin Central Valley Steelhead. This investigation involves undertaking experiments utilizing acoustically-tagged salmonids to confirm proportional causes of mortality due to flows, exports, and other project and non-project adverse effects on steelhead smelt out-migrating from the San Joaquin Basin and through the southern Delta. This study is to coincide with different periods of operations and focus on clipped hatchery steelhead (Oncorhynchus mykiss). The period of interest is between February 15 and June 15, which coincides with a majority of O. mykiss outmigration from the Stanislaus River and recoveries of steelhead smolts in the Mossdale fish monitoring efforts. This period is to include changes in CVP/SWP operations that include reductions in exports, reductions in reverse flows in Old and Middle rivers (OMR), and San Joaquin River pulse flows to assess the influence of flow and exports on juvenile steelhead survival. This study is designed to evaluate juvenile steelhead route selection at channel divergences in the south Delta and along the mainstem San Joaquin River, and how these behaviors influence survival in specific reaches and through the Delta to Chipps Island.
    Science topics None specified
    Updated April 29, 2022
  • Title

    Pacific States Marine Fisheries Commission Coleman-Nimbus Tagging

    Lead U.S. Bureau of Reclamation [USBR]
    Description 25% of fall- run Chinook tagged and clipped and annual report on hathchery contributions to fisheries and watersheds
    Science topics None specified
    Updated April 29, 2022
  • Title

    Red Bluff Diversion Dam Rotary Screw Traps

    Lead U.S. Bureau of Reclamation [USBR]
    Description Annual juvenile production estimates for ESA species in Sacramento River, Clear Creek, and Battle Creek
    Science topics None specified
    Updated April 29, 2022
  • Title

    Developing a Delta Residents Survey: Understanding the Beliefs and Behaviors of Sacramento-San Joaquin Delta Residents on Natural Resource Management Challenges

    Lead California Sea Grant
    Description The Delta Residents Survey (DRS) was a household survey conducted in the Sacramento-San Joaquin Delta in Northern California in 2023 to better understand residents' attitudes on key social and environmental challenges in the region. The data were collected via a survey (available online through Qualtrics or as a print version), with survey invitations sent by mail to a random sample of 82,000 household addresses in the rural “Primary Zone” of the Delta (survey Zone 1), the suburban and urban “Secondary Zone” of the Delta (survey Zone 2) and Delta-adjacent “EJ Communities” in South Sacramento and South Stockton (survey Zone 3). Maps of the survey zones are available in project documentation and the Results Summary Report. The survey was available in English and Spanish. Over 2,300 responses were received, constituting a 2.9 percent response rate. The survey included 43 multiple choice and short response questions, broken up into five sections around key themes: Sense of place and way of life Regional priorities, concerns, and quality of life Environmental and climate change experiences, concerns, and policy preferences Civic engagement and good governance Demographics The research was conducted by a collaborative team of environmental social scientists across multiple research universities (UC San Diego, UC Davis, UC Berkeley, Oregon State University, and Sacramento State University) and was funded by the Delta Stewardship Council's Delta Science Program (a California State Agency). Significant community engagement and partnership efforts were carried out to improve the relevancy of survey questions and interpretation of data. Additional resources, including summary report of results and other research products using the data, are posted on our project website as they become available: https://ktomari.github.io/DeltaResidentsSurvey/. We also have a GitHub repository, where R scripts (and accompanying plain-text descriptions of the functions used that can be translated into other programming languages) are posted, which provide the easiest way for reading in the data and ensuring variable types are set correctly. We highly recommend using or referencing these scripts for the easiest and most accurate use of the data: https://github.com/ktomari/DeltaResidentsSurvey.
    Science topics None specified
    Updated December 20, 2023
  • Title

    Continuous Flow and Water Quality Monitoring Network in the Sacramento-San Joaquin Delta

    Lead U.S. Geological Survey [USGS]
    Description This project envisions the continuation, expansion, and further integration of high frequency monitoring for flow, water quality (including chlorophyll and nutrients), sediment, as well as biological responses at key locations in the Delta and Suisun Bay. The physical properties monitored by the fixed-station network are the primary drivers of the habitat conditions and biological responses that management actions hope to achieve. Nutrient dynamics are explicitly measured at select stations to improve our understanding of how physical dynamics, water quality and landscape features shape the base of Delta food webs. These data will provide information about drivers linked to food quantity and quality as well as potential toxins production by harmful algae. Suspended-sediment monitoring provides an understanding of the inputs and internal exchanges between regions, locations of sources and sinks, and provides insight into the underlying cause of turbidity variability in the study area. Suspended-sediment measurements gage the availability of suspended sediment for existing marshes and for proposed large-scale marsh restoration efforts in the Delta. There are a total of 5 sub-tasks in this project: • Task 1: Hydrodynamics Team – Fixed Station Network Operation and Maintenance • Task 2: BioGeoChemistry Team -- Fixed Station Network Operation and Maintenance • Task 3: Delta Sediment Team – Fixed Station Network Operation and Maintenance • Task 4: Bay Sediment Team – Fixed Station Network Operation and Maintenance • Task 5: Project Management
    Science topics Chlorophyll A / B, Conductivity, Dissolved oxygen, Flows, Nutrients, pH, Phytoplankton, Sediments, Stage, Surface water / flow, Tides, Turbidity, Velocity, Water operations / exports, Water temperature
    Updated January 19, 2024